MESSAGE
| DATE | 2017-07-07 |
| FROM | From: "Pat Schloss"
|
| SUBJECT | Re: [Learn] [mothur] Upcoming R workshop for Microbial Ecologists
|
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From: "Pat Schloss"
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Subject: Re: [Learn] [mothur] Upcoming R workshop for Microbial Ecologists
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Thanks for your interest in attending a Crashcourse in R Workshop for Micro=
bial Ecologists. The workshop will run from August 28-30 near the Detroit =
airport. The workshop is being filled on a first come, first served basis.=
The workshop is geared towards people with interests in microbial ecology=
that would like to learn R or to learn it better so you shouldn't feel lik=
e this isn't for you if you are a beginner. I assume no previous computer =
programming experience. The workshop is an even blend of lecture/discussio=
n and hands on use of R with real data and typically uses mothur output fil=
es as a starting point. Here is a rough outline of the content that past w=
orkshops have covered.
Ordination
Stripcharts and box and whisker plots
Line plots
Barcharts
Subsetting data
Reading and writing data
Basic parametric and non-parametric analyses
Basics: Each day there will be a lecture and discussion interspersed with=
hands-on activities. The session will run from 9 to 5 with a lunch break =
in the middle.
To bring: It is important that you bring a laptop to the workshop. While =
it would be helpful if you came with R pre-installed, it is not that import=
ant since we can do this at the workshop. We will be using R studio as a p=
rogramming environment. People often find it helpful to bring along their =
own data to play with after they have mastered the examples I provide. Peo=
ple also find it helpful to bring a notebook for taking notes during the le=
cture components. Of course, a willingness to learn, questions, and a good=
sense of humor are essential!
Hotel: The workshop will be held at the LaQuinta Hotel (formerly the Lexi=
ngton Hotel; 30847 Flynn Dr; Romulus, MI), which has a free shuttle to and =
from the Detroit Airport (DTW; this is an International hub for Delta). We=
have a block of rooms being held for you at ~$89 per night plus tax that y=
ou will need to cover on your own. You can make a reservation by calling 7=
34-721-1100 and telling them that you would like to fill a reservation with=
in the Schloss block. Included in that rate is a continental breakfast and=
included in the cost of the course is a lunch for each day. There are a n=
umber of restaurants in the area where you can have dinner.
Costs: The cost of the three-day workshop is $600. I will save a seat fo=
r you when you make a $100 deposit; the full payment is due at the beginnin=
g of the workshop. The easiest way to place your deposit is to use www.pay=
pal.org to send the deposit to pdschloss-at-gmail.com. You need to either pay=
the balance or make arrangements with me by the start of the workshop.
Pat
> On Jul 7, 2017, at 9:09 AM, Paula Gale wrote:
>=20
> I am interested in participating in the R workshop for Microbial Ecologi=
sts. Please provide me with further information if slots are still availabl=
e.
> Thank you,
> Paula Gale
>=20
> Paula M. Gale, PhD, LPSS
> Professor of Soil Science and Assistant Director of Honors Programs
> UTAA Alumni Distinguished Service Professor
> Department of Agriculture, Geosciences, and Natural Resources
> 218B Brehm Hall
> University of Tennessee at Martin
> Martin, TN 38238
> office - 731-881-7326
> FAX - 731-881-7968
>=20
>=20
> From: mothur-at-groups.io to:mothur-at-groups.io>> on behalf of Pat Schloss :pdschloss-at-gmail.com>>
> Sent: Thursday, July 6, 2017 2:29 PM
> To: mothur-at-groups.io
> Subject: [mothur] Upcoming R workshop for Microbial Ecologists
>
> Hi there friends of mothur,
>=20
> I hope your summer is going well and that you=92re having fun collecting=
and playing with the data for your Next Great Paper! Something that may co=
me in handy is developing your skills with the R programming language. This=
is a great tool for doing simple and complicated analyses, generating grap=
hs, and making your analysis more reproducible for you and others that hope=
to build upon your work. I will be holding a Crashcourse in R Workshop for=
Microbial Ecologists from August 28-30 near the Detroit airport. The works=
hop is geared towards people with interests in microbial ecology that would=
like to learn R or to learn it better. So you shouldn't feel like this isn=
't for you if you are a beginner. I assume no previous computer programming=
experience. Also, although I will present material that uses mothur output=
for the basis of our work, I do not assume or require any mothur backgroun=
d and you should be able to generalize the material to output from other pr=
ograms. The workshop is an even blend of lecture/discussion and hands on us=
e of R with real data and typically uses mothur output files as a starting =
point. Here is a rough outline of the content that past workshops have cov=
ered.
>=20
> Ordination type plots
> Stripcharts and box and whisker plots
> Line plots
> Barcharts
> Subsetting data
> Reading and writing data
> Basic parametric and non-parametric analyses
> Literate programming tools for writing reproducible manuscripts =
and reports
>=20
> Please let me know if you are interested and would like more information=
on fees and how to register. The workshop is being filled on a first come,=
first served basis. This workshop has really grown in popularity over the =
last several years to rival my mothur workshop.
>=20
> Thanks,
> Pat Schloss
>=20
--Apple-Mail=_293F13BC-F7E2-4FEC-9F80-E18C3EFAE680
Content-Transfer-Encoding: quoted-printable
Content-Type: text/html;
charset=windows-1252
=3Dwindows-1252">-mode: space; -webkit-line-break: after-white-space;" class=3D"">=
=3D"">Thanks for your interest in attending a Crashcourse in R Workshop fo=
r Microbial Ecologists. The workshop will run from August 28-30 near =
the Detroit airport. The workshop is being filled on a first come, fi=
rst served basis. The workshop is geared towards people with interest=
s in microbial ecology that would like to learn R or to learn it better so =
you shouldn't feel like this isn't for you if you are a beginner. I a=
ssume no previous computer programming experience. The workshop is an=
even blend of lecture/discussion and hands on use of R with real data and =
typically uses mothur output files as a starting point. Here is a rou=
gh outline of the content that past workshops have covered. =
=3D"">
style=3D"white-space:pre"> Ordination ss=3D"Apple-tab-span" style=3D"white-space:pre"> Stripcharts and box=
and whisker plots e=3D"white-space:pre"> Line plots =3D"Apple-tab-span" style=3D"white-space:pre"> Barcharts class=3D""> >Subsetting data =3D"white-space:pre"> Reading and writing data > Basic par=
ametric and non-parametric analyses iv> Basics: Each day there will be a lecture and discu=
ssion interspersed with hands-on activities. The session will run fro=
m 9 to 5 with a lunch break in the middle.
=3D"">
To bring: It is important that you bring=
a laptop to the workshop. While it would be helpful if you came with R pre=
-installed, it is not that important since we can do this at the workshop. =
We will be using R studio as a programming environment. People =
often find it helpful to bring along their own data to play with after they=
have mastered the examples I provide. People also find it helpful to=
bring a notebook for taking notes during the lecture components. Of =
course, a willingness to learn, questions, and a good sense of humor are es=
sential!
Hotel: &=
nbsp;The workshop will be held at the LaQuinta Hotel (formerly the Lexingto=
n Hotel; 30847 Flynn Dr; Romulus, MI), which has a free shuttle to and from=
the Detroit Airport (DTW; this is an International hub for Delta). W=
e have a block of rooms being held for you at ~$89 per night plus tax that =
you will need to cover on your own. You can make a reservation by cal=
ling 734-721-1100 and telling them that you would like to fill a reservatio=
n within the Schloss block. Included in that rate is a continental br=
eakfast and included in the cost of the course is a lunch for each day. &nb=
sp;There are a number of restaurants in the area where you can have dinner.=
Costs: The= cost of the three-day workshop is $600. I will save a seat for you w= hen you make a $100 deposit; the full payment is due at the beginning of th= e workshop. The easiest way to place your deposit is to use =3D"http://www.paypal.org" class=3D"">www.paypal.org to send the depos= it to pdschloss-at-gmail.com=
. You need to either pay the balance or make arrangements with me= by the start of the workshop.
iv class=3D"">Pat
>
type=3D"cite" class=3D"">
d=3D"divtagdefaultwrapper" dir=3D"ltr" style=3D"font-style: normal; font-va= riant-caps: normal; font-weight: normal; letter-spacing: normal; orphans: a= uto; text-align: start; text-indent: 0px; text-transform: none; white-space= : normal; widows: auto; word-spacing: 0px; -webkit-text-stroke-width: 0px; = font-size: 12pt; font-family: Calibri, Helvetica, sans-serif, EmojiFont, 'A= pple Color Emoji', 'Segoe UI Emoji', NotoColorEmoji, 'Segoe UI Symbol', 'An= droid Emoji', EmojiSymbols;" class=3D""> in-bottom: 0px;" class=3D"">I am interested in participating in the R works=
hop for Microbial Ecologists. Please provide me with further information if=
slots are still available. om: 0px;" class=3D"">Thank you, bottom: 0px;" class=3D"">Paula Gale gin-bottom: 0px;" class=3D"">
ss=3D""> v style=3D"font-family: Tahoma; font-size: 13px;" class=3D"">margin-top: 0px; margin-bottom: 0px;" class=3D"">Paula M. Gale, PhD, LPSSdiv> Professo=
r of Soil Science and Assistant Director of Honors Programs =
=3D"margin-top: 0px; margin-bottom: 0px;" class=3D"">UTAA Alumni Distingui=
shed Service Professor px;" class=3D"">Department of Agriculture, Geosciences, and Natural Resourc=
es 218B=
Brehm Hall =3D"">University of Tennessee at Martin ; margin-bottom: 0px;" class=3D"">Martin, TN 38238 n-top: 0px; margin-bottom: 0px;" class=3D"">office - 731-881-7326 style=3D"margin-top: 0px; margin-bottom: 0px;" class=3D"">FAX - 731-881-79=
68 ss=3D"">
width: 591.90625px;" class=3D""> Hi there friends of mothur,r class=3D"">
I hope your summer is going well and that you=
=92re having fun collecting and playing with the data for your Next Great =
Paper! Something that may come in handy is developing your skills with the =
R programming language. This is a great tool for doing simple and complicat=
ed analyses, generating graphs, and making your analysis more reproducible =
for you and others that hope to build upon your work. I will be holding a C=
rashcourse in R Workshop for Microbial Ecologists from August 28-30 near th=
e Detroit airport. The workshop is geared towards people with interests in =
microbial ecology that would like to learn R or to learn it better. So you =
shouldn't feel like this isn't for you if you are a beginner. I assume no p=
revious computer programming experience. Also, although I will present mate=
rial that uses mothur output for the basis of our work, I do not assume or =
require any mothur background and you should be able to generalize the mate=
rial to output from other programs. The workshop is an even blend of lectur=
e/discussion and hands on use of R with real data and typically uses mothur=
output files as a starting point. Here is a rough outline of the con=
tent that past workshops have covered.
&=
nbsp; Ordination type plots
&nb=
sp; Stripcharts and box and whisker plo=
ts
Line plots
lass=3D""> Barcharts
"> Subsetting data
=
Reading and writing data
s=3D""> Basic parametric and non-=
parametric analyses
=
; Literate programming tools for writing reproducible manuscripts and repor=
ts
Please let me know if you are interested an=
d would like more information on fees and how to register. The workshop is =
being filled on a first come, first served basis. This workshop has really =
grown in popularity over the last several years to rival my mothur workshop=
.
Thanks,
Pat Schloss
=3D"">
=3D"">
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