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DATE 2017-03-01

LEARN

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MESSAGE
DATE 2017-03-28
FROM Ruben Safir
SUBJECT Subject: [Learn] computations
From learn-bounces-at-nylxs.com Tue Mar 28 23:11:10 2017
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http://www.transmittingscience.org/courses/phylogeny/quantitative-cladistic=
s-use-tnt/


3rd Edition
Quantitative Cladistics and Use of TNT

October 2nd-6th, 2017, Barcelona (Spain)

Quantitative Cladistics and Use of TNT

This course will cover the basics of parsimony analysis and character
optimisation, tree-searches, diagnosing and summarising results
efficiently, and measuring group supports.

This course will be informal, with extensive hands-on exercises which
will help students get familiar with the main aspects of phylogenetic
analysis using TNT. For each of the units in the course, there will be a
lecture (one to two hours, depending on the topics), then switching to
exercises illustrating the points just seen in the lecture. Switches
between =E2=80=9Clecture=E2=80=9D and =E2=80=9Chands-on=E2=80=9D mode will =
be dynamic, depending on how
students progress with the exercises.

This course will make extensive use of TNT. There will also be a
demonstration and some practice with GB->TNT, a program to create TNT
matrices from GenBank data (in turn, GB->TNT requires installation of an
alignment program, ideally Mafft or Muscle and possibly BioEdit to
inspect alignments).


-- =

So many immigrant groups have swept through our town
that Brooklyn, like Atlantis, reaches mythological
proportions in the mind of the world - RI Safir 1998
http://www.mrbrklyn.com

DRM is THEFT - We are the STAKEHOLDERS - RI Safir 2002
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  1. 2017-03-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] neutal networks and pacman
  2. 2017-03-02 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Ultrametric networks: a new tool for phylogenetic analysis
  3. 2017-03-05 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] cost in evolution
  4. 2017-03-09 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] CatScan fossil files
  5. 2017-03-10 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] neural Networks and Quantum Mechanics
  6. 2017-03-12 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] I just found a GREAT video on partial derivatives
  7. 2017-03-13 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] Contact DOJ and thell them to blow it out their ass
  8. 2017-03-14 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] CatScan fossil files
  9. 2017-03-14 Ramon Nagesan <ramon.nagesan-at-gmail.com> Re: [Learn] CatScan fossil files
  10. 2017-03-16 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] is this up
  11. 2017-03-16 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] hang out is down
  12. 2017-03-16 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] is this working
  13. 2017-03-16 Charlie Gonzalez <itcharlie-at-gmail.com> Subject: [Learn] Registration for The Perl Conference 2017 is now open!!
  14. 2017-03-16 From: "soledad.esteban" <soledad.esteban-at-icp.cat> Subject: [Learn] [dinosaur] Advanced course Geometric Morphometrics in R,
  15. 2017-03-17 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: [dinosaur] Advanced course Geometric Morphometrics in
  16. 2017-03-17 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] good news !
  17. 2017-03-18 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] circles
  18. 2017-03-20 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Alice
  19. 2017-03-20 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] hough transform - Lecture 9
  20. 2017-03-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Anyone understand this well
  21. 2017-03-21 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Fwd: [dinosaur] Digital mapping of dinosaurian tracksites
  22. 2017-03-22 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] ODBASE 2017 - The 16th International Conference on
  23. 2017-03-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Decision Tree
  24. 2017-03-24 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Genetic Modification with decent
  25. 2017-03-27 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] Fwd: Re: hough transform - Lecture 9
  26. 2017-03-27 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] MOOCS
  27. 2017-03-27 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Peter Novig learning and on line teaching
  28. 2017-03-28 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] computations
  29. 2017-03-29 Christopher League <league-at-contrapunctus.net> Re: [Learn] This is hard to understand what the logic is here
  30. 2017-03-29 Ruben Safir <ruben-at-mrbrklyn.com> Re: [Learn] This is hard to understand what the logic is here
  31. 2017-03-29 Christopher League <league-at-contrapunctus.net> Re: [Learn] This is hard to understand what the logic is here
  32. 2017-03-29 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] This is hard to understand what the logic is here
  33. 2017-03-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] perseptors
  34. 2017-03-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] This is hard to understand what the logic is here
  35. 2017-03-29 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] This is hard to understand what the logic is here
  36. 2017-03-30 Ruben Safir <mrbrklyn-at-panix.com> Re: [Learn] c arrays
  37. 2017-03-30 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] c arrays
  38. 2017-03-30 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] random weights
  39. 2017-03-30 Ruben Safir <mrbrklyn-at-panix.com> Subject: [Learn] randomize with commentary
  40. 2017-03-31 Ruben Safir <ruben-at-mrbrklyn.com> Subject: [Learn] Computational Paleo

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