MESSAGE
DATE | 2017-01-26 |
FROM | Ruben Safir
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SUBJECT | Subject: [Learn] (fwd) Felsenstein Phylogenies
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From learn-bounces-at-nylxs.com Thu Jan 26 18:50:08 2017 Return-Path: X-Original-To: archive-at-mrbrklyn.com Delivered-To: archive-at-mrbrklyn.com Received: from www.mrbrklyn.com (www.mrbrklyn.com [96.57.23.82]) by mrbrklyn.com (Postfix) with ESMTP id A932F161317; Thu, 26 Jan 2017 18:50:07 -0500 (EST) X-Original-To: learn-at-nylxs.com Delivered-To: learn-at-nylxs.com Received: from mailbackend.panix.com (mailbackend.panix.com [166.84.1.89]) by mrbrklyn.com (Postfix) with ESMTP id 4BD4E161313 for ; Thu, 26 Jan 2017 18:49:51 -0500 (EST) Received: from panix2.panix.com (panix2.panix.com [166.84.1.2]) by mailbackend.panix.com (Postfix) with ESMTP id 478641389C for ; Thu, 26 Jan 2017 18:49:50 -0500 (EST) Received: by panix2.panix.com (Postfix, from userid 20529) id 2468F33CA2; Thu, 26 Jan 2017 18:49:50 -0500 (EST) From: Ruben Safir To: learn-at-nylxs.com User-Agent: tin/2.2.1-20140504 ("Tober an Righ") (UNIX) (NetBSD/7.0.2 (i386)) Message-Id: <20170126234950.2468F33CA2-at-panix2.panix.com> Date: Thu, 26 Jan 2017 18:49:50 -0500 (EST) Subject: [Learn] (fwd) Felsenstein Phylogenies X-BeenThere: learn-at-nylxs.com X-Mailman-Version: 2.1.17 Precedence: list List-Id: List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , MIME-Version: 1.0 Content-Type: text/plain; charset="us-ascii" Content-Transfer-Encoding: 7bit Errors-To: learn-bounces-at-nylxs.com Sender: "Learn"
-- forwarded message -- Path: reader1.panix.com!panix!not-for-mail From: Ruben Safir Newsgroups: sci.bio.paleontology Subject: Felsenstein Phylogenies Date: Wed, 25 Jan 2017 23:53:12 +0000 (UTC) Organization: PANIX Public Access Internet and UNIX, NYC Lines: 11 Message-ID: NNTP-Posting-Host: panix2.panix.com X-Trace: reader1.panix.com 1485388392 10717 166.84.1.2 (25 Jan 2017 23:53:12 GMT) X-Complaints-To: abuse-at-panix.com NNTP-Posting-Date: Wed, 25 Jan 2017 23:53:12 +0000 (UTC) User-Agent: tin/2.2.1-20140504 ("Tober an Righ") (UNIX) (NetBSD/6.1.5 (i386)) Xref: panix sci.bio.paleontology:67122
Does anyone have the above text handy? I think what he wrote with regard to Subtree Programming and Grafting is incorrect.
If you have 2 subtrees n1 and n2,the number of neighbors should be (2n1 -4) * (2n2 - 4) --- not addition
each spot has 2n-3 - 1 permutations.
He doesn't explain what external branches are either.
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