MESSAGE
DATE | 2019-07-12 |
FROM | From: "Pat Schloss"
|
SUBJECT | Subject: [Hangout - NYLXS] [mothur] August R workshop for microbial
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From hangout-bounces-at-nylxs.com Mon Jul 15 01:59:37 2019 Return-Path: X-Original-To: archive-at-mrbrklyn.com Delivered-To: archive-at-mrbrklyn.com Received: from www2.mrbrklyn.com (www2.mrbrklyn.com [96.57.23.82]) by mrbrklyn.com (Postfix) with ESMTP id 98B2316113A; Mon, 15 Jul 2019 01:59:37 -0400 (EDT) X-Original-To: hangout-at-www2.mrbrklyn.com Delivered-To: hangout-at-www2.mrbrklyn.com Received: by mrbrklyn.com (Postfix, from userid 1000) id 57D1F161134; Mon, 15 Jul 2019 01:59:35 -0400 (EDT) Resent-From: Ruben Safir Resent-Date: Mon, 15 Jul 2019 01:59:35 -0400 Resent-Message-ID: <20190715055935.GB21603-at-www2.mrbrklyn.com> Resent-To: hangout-at-mrbrklyn.com X-Original-To: ruben-at-mrbrklyn.com Delivered-To: ruben-at-mrbrklyn.com Received: from web01.groups.io (web01.groups.io [66.175.222.12]) by mrbrklyn.com (Postfix) with ESMTP id 1D416161132 for ; Fri, 12 Jul 2019 11:07:15 -0400 (EDT) X-Received: from mail-io1-f43.google.com (mail-io1-f43.google.com [209.85.166.43]) by groups.io with SMTP; Fri, 12 Jul 2019 08:07:05 -0700 X-Received: by mail-io1-f43.google.com with SMTP id g20so20953255ioc.12 for ; Fri, 12 Jul 2019 08:07:05 -0700 (PDT) X-Gm-Message-State: APjAAAVILkz/Xxmnf1XR9BZzaWLSgthOb+LDb3ULQCM+/2xP2oCWZ0sw +3f0Y2C+Cs6Rc4A19H8nzWyGV+4d X-Google-Smtp-Source: APXvYqyWTidWdHhSYhOnxh/0jOO/nseI1dBNwh5Zt5DlEl4GNzIjmZMrtDzeM6HM1WRKqHNMoGpVlA== X-Received: by 2002:a6b:3102:: with SMTP id j2mr1141316ioa.5.1562944024573; Fri, 12 Jul 2019 08:07:04 -0700 (PDT) X-Received: from [10.17.160.142] (host-243.subnet-17.med.umich.edu. [141.214.17.243]) by smtp.gmail.com with ESMTPSA id r5sm7843086iom.42.2019.07.12.08.07.04 for (version=TLS1_2 cipher=ECDHE-RSA-AES128-GCM-SHA256 bits=128/128); Fri, 12 Jul 2019 08:07:04 -0700 (PDT) From: "Pat Schloss" Mime-Version: 1.0 (Mac OS X Mail 12.4 \(3445.104.11\)) Message-Id: <3C26F63B-F708-4A18-922B-35A1357D106A-at-gmail.com> Date: Fri, 12 Jul 2019 11:07:03 -0400 To: mothur-at-groups.io Precedence: Bulk Mailing-List: list mothur-at-groups.io; contact mothur+owner-at-groups.io Delivered-To: mailing list mothur-at-groups.io DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/simple; d=groups.io; q=dns/txt; s=20140610; t=1562944034; bh=nilsYzCGiLiI52p0rDWR6jk/sCbfMstA3naOfGL5y98=; h=Content-Type:Date:From:Reply-To:Subject:To; b=d66zos/yrjNipkY77jWFBm/MXKC311HG3dooQ/RHBMGIXCH7NQ/TStaOho7PHv06VaD uGte0u5Cgm98QNZmdWx+Jt2uXlLjlnmg4NEiIHXBWXMrVGpQxuRDheTPSYU2/80IeD0tQ dn7l5PNLHC3HeTs3pjXE/kC2Q+GiTzbdW50= X-UID: 59930 Subject: [Hangout - NYLXS] [mothur] August R workshop for microbial ecologists X-BeenThere: hangout-at-nylxs.com X-Mailman-Version: 2.1.17 Reply-To: mothur-at-groups.io List-Id: NYLXS Tech Talk and Politics List-Unsubscribe: , List-Post: List-Help: List-Subscribe: , Content-Type: multipart/mixed; boundary="===============1209976465==" Errors-To: hangout-bounces-at-nylxs.com Sender: "Hangout"
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I hope you are having an excellent summer!
I suspect you may be off doing field work, generating tons of awesome data= for your project, or thinking about how you will package it together to te= ll a compelling story. You might also be thinking about learning R to impro= ve the reproducibility and rigor of your analyses and will help you to make= attractive data visualizations. Sure, tools like mothur will help you proc= ess raw sequencing data, but they can only get you so far until you need so= mething customized for your biological questions. This is where many have f= ound R to be enormously helpful. Further, if you aren=E2=80=99t even thinki= ng about sequence data, R will help you analyze any data you have and will = serve you as you continue in your career.=20
I will be teaching a 3 day R workshop from August 28-30 near the Detroit a= irport. The workshop is being filled on a first come, first served basis. T= he workshop is geared towards people with interests in microbial ecology th= at would like to learn R or to learn it better. So you shouldn't feel like = this isn't for you if you are a beginner. I assume no previous computer pro= gramming experience. The workshop is an even blend of lecture/discussion an= d hands on use of R with real data and typically uses mothur output files a= s a starting point. Here is a rough outline of the content that past worksh= ops have covered. We will make extensive use of packages from within the ti= dyverse like ggplot2 and dplyr:
Ordination Stripcharts and box and whisker plots Line plots Barcharts Subsetting data Reading and writing data Basic parametric and non-parametric analyses
Each day there will be a lecture and discussion interspersed with hands-on= activities. The session will run from 9 to 5 with a lunch break in the mi= ddle. Unfortunately, the internet connection in the room is not strong enou= gh to facilitate remote learners.=20
Please let me know if you would like additional details about costs, hotel= reservations, and registration.
Pat
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= =3Dutf-8">space; line-break: after-white-space;" class=3D"">e=3D"Menlo-Regular" class=3D"">= I hope you are having an excellent summer! ""> class=3D"">
=3D"Menlo-Regular" class=3D"">= I suspect you may be off doing field work, generating tons of awesome data = for your project, or thinking about how you will package it together to tel= l a compelling story. You might also be thinking about learning R to improv= e the reproducibility and rigor of your analyses and will help yo= u to make attractive data visualizations. Sure, tools like mothur will help= you process raw sequencing data, but they can only get you so far until yo= u need something customized for your biological questions. This is where ma= ny have found R to be enormously helpful. Further, if you aren=E2=80=99t ev= en thinking about sequence data, R will help you analyze any data you have = and will serve you as you continue in your career. >iv class=3D"">
I will be teaching a 3 d= ay R workshop from August 28-30 near the Detroit airport. The workshop is b= eing filled on a first come, first served basis. The workshop is geared tow= ards people with interests in microbial ecology that would like to learn R = or to learn it better. So you shouldn't feel like this isn't for you if you= are a beginner. I assume no previous computer programming experience. The = workshop is an even blend of lecture/discussion and hands on use of R with = real data and typically uses mothur output files as a starting point. Here = is a rough outline of the content that past workshops have covered. We will= make extensive use of packages from within the tidyverse like ggplot2 and = dplyr: ;" class=3D"">gular; font-size: 11px; white-space: pre;"> ly: Menlo-Regular; font-size: 11px;" class=3D"">Ordination =3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">=3D"Apple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; = white-space: pre;"> size: 11px;" class=3D"">Stripcharts and box and whisker plots le=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">=3D"Apple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; = white-space: pre;"> size: 11px;" class=3D"">Line plots gular; font-size: 11px;" class=3D"">"font-family: Menlo-Regular; font-size: 11px; white-space: pre;"> pan style=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">Barch= arts = =3D"">font-size: 11px; white-space: pre;"> lo-Regular; font-size: 11px;" class=3D"">Subsetting data "font-family: Menlo-Regular; font-size: 11px;" class=3D"">ple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; white-s= pace: pre;"> 1px;" class=3D"">Reading and writing data enlo-Regular; font-size: 11px;" class=3D"">tyle=3D"font-family: Menlo-Regular; font-size: 11px; white-space: pre;"> = span>">Basic parametric and non-parametric analyses ly: Menlo-Regular; font-size: 11px;" class=3D""> enlo-Regular; font-size: 11px;" class=3D"">ss=3D"">Each day there will be = a lecture and discussion interspersed with hands-on activities. The s= ession will run from 9 to 5 with a lunch break in the middle. Unfortunately= , the internet connection in the room is not strong enough to facilita= te remote learners. enlo-Regular" class=3D""> ass=3D""> lass=3D"">Please let me know if= you would like additional details about costs, hotel reservations, and reg= istration. class=3D""> n> n style=3D"font-size: 11px;" class=3D"">Pat v class=3D""> ss=3D""> ""> = div>
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I hope you are having an excellent summer!
I suspect you may be off doing field work, generating tons of awesome data= for your project, or thinking about how you will package it together to te= ll a compelling story. You might also be thinking about learning R to impro= ve the reproducibility and rigor of your analyses and will help you to make= attractive data visualizations. Sure, tools like mothur will help you proc= ess raw sequencing data, but they can only get you so far until you need so= mething customized for your biological questions. This is where many have f= ound R to be enormously helpful. Further, if you aren=E2=80=99t even thinki= ng about sequence data, R will help you analyze any data you have and will = serve you as you continue in your career.=20
I will be teaching a 3 day R workshop from August 28-30 near the Detroit a= irport. The workshop is being filled on a first come, first served basis. T= he workshop is geared towards people with interests in microbial ecology th= at would like to learn R or to learn it better. So you shouldn't feel like = this isn't for you if you are a beginner. I assume no previous computer pro= gramming experience. The workshop is an even blend of lecture/discussion an= d hands on use of R with real data and typically uses mothur output files a= s a starting point. Here is a rough outline of the content that past worksh= ops have covered. We will make extensive use of packages from within the ti= dyverse like ggplot2 and dplyr:
Ordination Stripcharts and box and whisker plots Line plots Barcharts Subsetting data Reading and writing data Basic parametric and non-parametric analyses
Each day there will be a lecture and discussion interspersed with hands-on= activities. The session will run from 9 to 5 with a lunch break in the mi= ddle. Unfortunately, the internet connection in the room is not strong enou= gh to facilitate remote learners.=20
Please let me know if you would like additional details about costs, hotel= reservations, and registration.
Pat
-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D- Groups.io Links: You receive all messages sent to this group.
View/Reply Online (#25): https://groups.io/g/mothur/message/25 Mute This Topic: https://groups.io/mt/32442797/321522 Group Owner: mothur+owner-at-groups.io Unsubscribe: https://groups.io/g/mothur/leave/630748/2086763283/xyzzy [ru= ben-at-mrbrklyn.com] -=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-=3D-
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= =3Dutf-8">space; line-break: after-white-space;" class=3D"">e=3D"Menlo-Regular" class=3D"">= I hope you are having an excellent summer! ""> class=3D"">
=3D"Menlo-Regular" class=3D"">= I suspect you may be off doing field work, generating tons of awesome data = for your project, or thinking about how you will package it together to tel= l a compelling story. You might also be thinking about learning R to improv= e the reproducibility and rigor of your analyses and will help yo= u to make attractive data visualizations. Sure, tools like mothur will help= you process raw sequencing data, but they can only get you so far until yo= u need something customized for your biological questions. This is where ma= ny have found R to be enormously helpful. Further, if you aren=E2=80=99t ev= en thinking about sequence data, R will help you analyze any data you have = and will serve you as you continue in your career. >iv class=3D"">
I will be teaching a 3 d= ay R workshop from August 28-30 near the Detroit airport. The workshop is b= eing filled on a first come, first served basis. The workshop is geared tow= ards people with interests in microbial ecology that would like to learn R = or to learn it better. So you shouldn't feel like this isn't for you if you= are a beginner. I assume no previous computer programming experience. The = workshop is an even blend of lecture/discussion and hands on use of R with = real data and typically uses mothur output files as a starting point. Here = is a rough outline of the content that past workshops have covered. We will= make extensive use of packages from within the tidyverse like ggplot2 and = dplyr: ;" class=3D"">gular; font-size: 11px; white-space: pre;"> ly: Menlo-Regular; font-size: 11px;" class=3D"">Ordination =3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">=3D"Apple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; = white-space: pre;"> size: 11px;" class=3D"">Stripcharts and box and whisker plots le=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">=3D"Apple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; = white-space: pre;"> size: 11px;" class=3D"">Line plots gular; font-size: 11px;" class=3D"">"font-family: Menlo-Regular; font-size: 11px; white-space: pre;"> pan style=3D"font-family: Menlo-Regular; font-size: 11px;" class=3D"">Barch= arts = =3D"">font-size: 11px; white-space: pre;"> lo-Regular; font-size: 11px;" class=3D"">Subsetting data "font-family: Menlo-Regular; font-size: 11px;" class=3D"">ple-tab-span" style=3D"font-family: Menlo-Regular; font-size: 11px; white-s= pace: pre;"> 1px;" class=3D"">Reading and writing data enlo-Regular; font-size: 11px;" class=3D"">tyle=3D"font-family: Menlo-Regular; font-size: 11px; white-space: pre;"> = span>">Basic parametric and non-parametric analyses ly: Menlo-Regular; font-size: 11px;" class=3D""> enlo-Regular; font-size: 11px;" class=3D"">ss=3D"">Each day there will be = a lecture and discussion interspersed with hands-on activities. The s= ession will run from 9 to 5 with a lunch break in the middle. Unfortunately= , the internet connection in the room is not strong enough to facilita= te remote learners. enlo-Regular" class=3D""> ass=3D""> lass=3D"">Please let me know if= you would like additional details about costs, hotel reservations, and reg= istration. class=3D""> n> n style=3D"font-size: 11px;" class=3D"">Pat v class=3D""> ss=3D""> ""> = div>
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